harmonize with coredesktop

install.sh

@@ -76,11 +76,13 @@ cd ~/.local/share/MiniServer
 # Source utility functions (provides install_packages, install_script and other helpers)
 source utils.sh
 
-# Install the refresh, update and sibling management scripts to the user's bin
+# Install the refresh, update, sibling, version and configure scripts to the user's bin
 mkdir -p "$HOME/.local/bin"
 install_script "$HOME/.local/share/MiniServer/refresh" "$HOME/.local/bin/refresh"
 install_script "$HOME/.local/share/MiniServer/update" "$HOME/.local/bin/update"
 install_script "$HOME/.local/share/MiniServer/sibling" "$HOME/.local/bin/sibling"
+install_script "$HOME/.local/share/MiniServer/version" "$HOME/.local/bin/version"
+install_script "$HOME/.local/share/MiniServer/configure" "$HOME/.local/bin/configure"
 
 # Replaced by refresh and update
 rm -f "$HOME/.local/bin/miniserverrefresh" "$HOME/.local/bin/miniserverupdate"
@@ -122,6 +124,12 @@ install_packages "${SERVERS[@]}"
 echo "Installing utilities..."
 install_packages "${UTILITIES[@]}"
 
+echo "Installing shell tools..."
+install_packages "${SHELL_TOOLS[@]}"
+
+echo "Installing AI agents and their sandbox..."
+install_packages "${AGENTS[@]}"
+
 if ! command -v pm2 &> /dev/null; then
   npm install pm2 -g --prefix "$HOME/.local"
 fi
@@ -150,6 +158,36 @@ if ! systemctl is-enabled --quiet sddm; then
   sudo systemctl enable sddm
 fi
 
+# Install Claude Code
+echo "Installing Claude Code..."
+bash ~/.local/share/MiniServer/claude.sh
+
+# Run AI agents (opencode, hermes) in a sandbox, and turn on Claude Code's own
+echo "Setting up sandboxed AI agents..."
+bash ~/.local/share/MiniServer/sandbox/setup.sh
+
+# Prompt, zoxide, fzf key bindings, aliases and functions
+echo "Configuring the shell..."
+bash ~/.local/share/MiniServer/shell/setup.sh
+
+# Run one-time migrations not yet recorded on this machine. On a fresh install
+# they repeat setup done above, which is safe because each one is idempotent.
+echo "Running migrations..."
+run_migrations
+
+# Offer configure only if something is still to do, as refresh runs this too.
+# This script is usually piped into bash, so ask on the terminal, not stdin.
+if ~/.local/bin/configure --list | grep -q '^to do'; then
+  echo
+  echo "configure mounts your Nextcloud files and signs you in to the AI agents."
+  if { : < /dev/tty; } 2> /dev/null && read -rp "Run configure now? [Y/n] " answer < /dev/tty \
+      && [[ "$answer" != [nN]* ]]; then
+    ~/.local/bin/configure < /dev/tty || true
+  else
+    echo "To do it later, run: configure"
+  fi
+fi
+
 echo ""
 read -rp "A reboot is required to complete setup. Reboot now? [y/N] " response </dev/tty
 case "$response" in